Professor of Chemical Physics

The self-assembly of complex mesoscopic structures, the folding of proteins, and the complicated phenomenology of glasses are all manifestations of the underlying potential energy surface (PES). In each of these fields related ideas have emerged to explain and predict chemical and physical properties in terms of the PES. In studies of clusters and glasses the PES itself is often investigated directly, whereas for proteins and other biomolecules it is also common to define free energy surfaces, as the figure below illustrates for lysozyme.

Applications of energy landscape theory in my group range from studies of tunnelling splitting patterns in small molecules to computer simulation of protein folding and misfolding, including aggregation of misfolded proteins. Other active research topics include global optimisation and investigation of how the thermodynamic and dynamic properties of glasses are related to the underlying PES.

Two recent advances are now providing new insight into larger systems. Discrete path sampling enables dynamical properties to be obtained efficiently, and is being used to calculate folding rates for proteins. Unexpected connections between dynamics and thermodynamics have also been revealed by the application of catastrophe theory to energy landscapes, and new results are now being obtained to characterize phase transitions.

Publications

Crystal Structure Prediction for Benzene Using Basin-Hopping Global Optimization.
A Banerjee, D Jasrasaria, SP Niblett, DJ Wales
The journal of physical chemistry. A
(2021)
125
Development of ReaxFF Reactive Force Field for Aqueous Iron-sulfur Clusters with Applications to Stability and Reactivity in Water
E Moerman, D Furman, DJ Wales
Journal of Chemical Information and Modeling
(2021)
61
Energy Landscapes for Electronic Structure.
HGA Burton, DJ Wales
Journal of chemical theory and computation
(2020)
17
Optimal dimensionality reduction of Markov chains using graph transformation.
D Kannan, DJ Sharpe, TD Swinburne, DJ Wales
Journal of Chemical Physics
(2020)
153
Systematic Evaluation of ReaxFF Reactive Force Fields for Biochemical Applications.
E Moerman, D Furman, DJ Wales
J Chem Theory Comput
(2020)
17
Rare events and first passage time statistics from the energy landscape.
TD Swinburne, D Kannan, DJ Sharpe, DJ Wales
The Journal of Chemical Physics
(2020)
153
Energy Landscape for the Membrane Fusion Pathway in Influenza A Hemagglutinin From Discrete Path Sampling.
DF Burke, RG Mantell, CE Pitt, DJ Wales
Frontiers in Chemistry
(2020)
8
Fragility and correlated dynamics in supercooled liquids.
A Banerjee, DJ Wales
The Journal of chemical physics
(2020)
153
Archetypal landscapes for deep neural networks.
PC Verpoort, AA Lee, DJ Wales
Proceedings of the National Academy of Sciences of the United States of America
(2020)
117
Protein energy landscape exploration with structure-based models
S Neelamraju, DJ Wales, S Gosavi
Curr Opin Struct Biol
(2020)
64

Head of group

Research Interest Groups

Telephone number

01223 336354

Email address

Click on an image to view animations from Energy Landscapes of Model Knotted Polymers, Journal of Chemical Theory and Computation, Tongfan Hao, Yinghao Ge, Mark A. Miller, Agustin L. N. Francesco, David J. Wales, DOI 10.1021/acs.jctc.5c01005

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