Professor of Chemical Physics

The self-assembly of complex mesoscopic structures, the folding of proteins, and the complicated phenomenology of glasses are all manifestations of the underlying potential energy surface (PES). In each of these fields related ideas have emerged to explain and predict chemical and physical properties in terms of the PES. In studies of clusters and glasses the PES itself is often investigated directly, whereas for proteins and other biomolecules it is also common to define free energy surfaces, as the figure below illustrates for lysozyme.

Applications of energy landscape theory in my group range from studies of tunnelling splitting patterns in small molecules to computer simulation of protein folding and misfolding, including aggregation of misfolded proteins. Other active research topics include global optimisation and investigation of how the thermodynamic and dynamic properties of glasses are related to the underlying PES.

Two recent advances are now providing new insight into larger systems. Discrete path sampling enables dynamical properties to be obtained efficiently, and is being used to calculate folding rates for proteins. Unexpected connections between dynamics and thermodynamics have also been revealed by the application of catastrophe theory to energy landscapes, and new results are now being obtained to characterize phase transitions.

Publications

Perspective: New insights from loss function landscapes of neural networks
SR Chitturi, PC Verpoort, AA Lee, DJ Wales
Machine Learning Science and Technology
(2020)
1
Affinity-selected bicyclic peptide G-quadruplex ligands mimic a protein-like binding mechanism
KC Liu, K Röder, C Mayer, S Adhikari, DJ Wales, S Balasubramanian
J Am Chem Soc
(2020)
142
Counterion-Trapped-Molecules: From High Polarity and Enriched IR Spectra to Induced Isomerization
FY Naumkin, DJ Wales
ChemPhysChem: a European journal of chemical physics and physical chemistry
(2020)
21
Multifunnel Energy Landscapes for Phosphorylated Translation Repressor 4E-BP2 and Its Mutants
W Kang, F Jiang, Y-D Wu, DJ Wales
Journal of Chemical Theory and Computation
(2020)
16
A multifunnel energy landscape encodes the competing $\alpha$-helix and $\beta$-hairpin conformations for a designed peptide
D Chakraborty, Y Chebaro, DJ Wales
Phys Chem Chem Phys
(2020)
22
Flip rearrangement in the water pentamer: Analysis of electronic structure
T Xu, X Bin, SR Kirk, DJ Wales, S Jenkins
International Journal of Quantum Chemistry
(2019)
120
Nested Basin-Sampling
D Wales, M Griffiths
Journal of Chemical Physics
(2019)
15
Transforming the Accuracy and Numerical Stability of ReaxFF Reactive Force Fields.
D Furman, DJ Wales
Journal of Physical Chemistry Letters
(2019)
10
Structural transitions in the RNA 7SK 5′ hairpin and their effect on HEXIM binding
K Röder, G Stirnemann, A-C Dock-Bregeon, DJ Wales, S Pasquali
Nucleic Acids Res
(2019)
48
Energy Landscapes and Hybridization Pathways for DNA Hexamer Duplexes.
S Xiao, DJ Sharpe, D Chakraborty, DJ Wales
Journal of Physical Chemistry Letters
(2019)
10

Head of group

Research Interest Groups

Telephone number

01223 336354

Email address

Upcoming Events

Energy Landscapes 2026 Telluride

Click on an image to view animations from Energy Landscapes of Model Knotted Polymers, Journal of Chemical Theory and Computation, Tongfan Hao, Yinghao Ge, Mark A. Miller, Agustin L. N. Francesco, David J. Wales, DOI 10.1021/acs.jctc.5c01005

composite knot

link knot