Professor of Chemical Physics

The self-assembly of complex mesoscopic structures, the folding of proteins, and the complicated phenomenology of glasses are all manifestations of the underlying potential energy surface (PES). In each of these fields related ideas have emerged to explain and predict chemical and physical properties in terms of the PES. In studies of clusters and glasses the PES itself is often investigated directly, whereas for proteins and other biomolecules it is also common to define free energy surfaces, as the figure below illustrates for lysozyme.

Applications of energy landscape theory in my group range from studies of tunnelling splitting patterns in small molecules to computer simulation of protein folding and misfolding, including aggregation of misfolded proteins. Other active research topics include global optimisation and investigation of how the thermodynamic and dynamic properties of glasses are related to the underlying PES.

Two recent advances are now providing new insight into larger systems. Discrete path sampling enables dynamical properties to be obtained efficiently, and is being used to calculate folding rates for proteins. Unexpected connections between dynamics and thermodynamics have also been revealed by the application of catastrophe theory to energy landscapes, and new results are now being obtained to characterize phase transitions.

Publications

Markov state modeling and dynamical coarse-graining via discrete relaxation path sampling.
B Fačkovec, E Vanden-Eijnden, DJ Wales
The Journal of Chemical Physics
(2015)
143
Hydroxyproline Ring Pucker Causes Frustration of Helix Parameters in the Collagen Triple Helix.
WY Chow, D Bihan, CJ Forman, DA Slatter, DG Reid, DJ Wales, RW Farndale, MJ Duer
Sci Rep
(2015)
5
Energy landscapes of a hairpin peptide including NMR chemical shift restraints
JM Carr, CS Whittleston, DC Wade, DJ Wales
Phys Chem Chem Phys
(2015)
17
Membrane Protein Structure, Function, and Dynamics: a Perspective from Experiments and Theory
Z Cournia, TW Allen, I Andricioaei, B Antonny, D Baum, G Brannigan, N-V Buchete, JT Deckman, L Delemotte, C Del Val, R Friedman, P Gkeka, H-C Hege, J Hénin, MA Kasimova, A Kolocouris, ML Klein, S Khalid, MJ Lemieux, N Lindow, M Roy, J Selent, M Tarek, F Tofoleanu, S Vanni, S Urban, DJ Wales, JC Smith, A-N Bondar
The Journal of membrane biology
(2015)
248
Intrinsically disordered energy landscapes
Y Chebaro, AJ Ballard, D Chakraborty, DJ Wales
Scientific reports
(2015)
5
Exploring the potential energy landscape of the Thomson problem via Newton homotopies.
D Mehta, T Chen, JWR Morgan, DJ Wales
J Chem Phys
(2015)
142
Quasi-combinatorial energy landscapes for nanoalloy structure optimisation.
D Schebarchov, DJ Wales
Physical Chemistry Chemical Physics
(2015)
17
Equilibrium molecular thermodynamics from Kirkwood sampling.
S Somani, Y Okamoto, AJ Ballard, DJ Wales
The Journal of Physical Chemistry B
(2015)
119
Structures and Energy Landscapes of Hydrated Sulfate Clusters.
LC Smeeton, JD Farrell, MT Oakley, DJ Wales, RL Johnston
Journal of chemical theory and computation
(2015)
11
Analysis of the Contrasting Pathogenicities Induced by the D222G Mutation in 1918 and 2009 Pandemic Influenza A Viruses.
C Shang, CS Whittleston, KH Sutherland-Cash, DJ Wales
Journal of chemical theory and computation
(2015)
11

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Research Interest Groups

Telephone number

01223 336354

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