Professor of Chemical Physics

The self-assembly of complex mesoscopic structures, the folding of proteins, and the complicated phenomenology of glasses are all manifestations of the underlying potential energy surface (PES). In each of these fields related ideas have emerged to explain and predict chemical and physical properties in terms of the PES. In studies of clusters and glasses the PES itself is often investigated directly, whereas for proteins and other biomolecules it is also common to define free energy surfaces, as the figure below illustrates for lysozyme.

Applications of energy landscape theory in my group range from studies of tunnelling splitting patterns in small molecules to computer simulation of protein folding and misfolding, including aggregation of misfolded proteins. Other active research topics include global optimisation and investigation of how the thermodynamic and dynamic properties of glasses are related to the underlying PES.

Two recent advances are now providing new insight into larger systems. Discrete path sampling enables dynamical properties to be obtained efficiently, and is being used to calculate folding rates for proteins. Unexpected connections between dynamics and thermodynamics have also been revealed by the application of catastrophe theory to energy landscapes, and new results are now being obtained to characterize phase transitions.

Publications

How to make a porphyrin flip: dynamics of asymmetric porphyrin oligomers
C Shang, JM Philpott, N Bampos, PD Barker, DJ Wales
Phys Chem Chem Phys
(2015)
17
Computational investigation of RNA CUG repeats responsible for myotonic dystrophy 1.
I Yildirim, D Chakraborty, MD Disney, DJ Wales, GC Schatz
J Chem Theory Comput
(2015)
11
Mapping Structural Changes in Electrode Materials: Application of the Hybrid Eigenvector-Following Density Functional Theory (DFT) Method to Layered Li0.5MnO2
ID Seymour, S Chakraborty, DS Middlemiss, DJ Wales, CP Grey
Chemistry of Materials
(2015)
27
Markov state modeling and dynamical coarse-graining via discrete relaxation path sampling
B Fačkovec, E Vanden-Eijnden, DJ Wales
J Chem Phys
(2015)
143
Hydroxyproline Ring Pucker Causes Frustration of Helix Parameters in the Collagen Triple Helix.
WY Chow, D Bihan, CJ Forman, DA Slatter, DG Reid, DJ Wales, RW Farndale, MJ Duer
Sci Rep
(2015)
5
Energy landscapes of a hairpin peptide including NMR chemical shift restraints.
JM Carr, CS Whittleston, DC Wade, DJ Wales
Phys Chem Chem Phys
(2015)
17
Membrane Protein Structure, Function, and Dynamics: a Perspective from Experiments and Theory
Z Cournia, TW Allen, I Andricioaei, B Antonny, D Baum, G Brannigan, N-V Buchete, JT Deckman, L Delemotte, C Del Val, R Friedman, P Gkeka, H-C Hege, J Hénin, MA Kasimova, A Kolocouris, ML Klein, S Khalid, MJ Lemieux, N Lindow, M Roy, J Selent, M Tarek, F Tofoleanu, S Vanni, S Urban, DJ Wales, JC Smith, A-N Bondar
Journal of Membrane Biology
(2015)
248
Intrinsically disordered energy landscapes.
Y Chebaro, AJ Ballard, D Chakraborty, DJ Wales
Sci Rep
(2015)
5
Exploring the potential energy landscape of the Thomson problem via Newton homotopies.
D Mehta, T Chen, JWR Morgan, DJ Wales
The Journal of chemical physics
(2015)
142
Quasi-combinatorial energy landscapes for nanoalloy structure optimisation.
D Schebarchov, DJ Wales
Physical chemistry chemical physics : PCCP
(2015)
17

Head of group

Research Interest Groups

Telephone number

01223 336354

Email address

Upcoming Events

Energy Landscapes 2026 Telluride

Click on an image to view animations from Energy Landscapes of Model Knotted Polymers, Journal of Chemical Theory and Computation, Tongfan Hao, Yinghao Ge, Mark A. Miller, Agustin L. N. Francesco, David J. Wales, DOI 10.1021/acs.jctc.5c01005

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