Professor of Chemical Physics

The self-assembly of complex mesoscopic structures, the folding of proteins, and the complicated phenomenology of glasses are all manifestations of the underlying potential energy surface (PES). In each of these fields related ideas have emerged to explain and predict chemical and physical properties in terms of the PES. In studies of clusters and glasses the PES itself is often investigated directly, whereas for proteins and other biomolecules it is also common to define free energy surfaces, as the figure below illustrates for lysozyme.

Applications of energy landscape theory in my group range from studies of tunnelling splitting patterns in small molecules to computer simulation of protein folding and misfolding, including aggregation of misfolded proteins. Other active research topics include global optimisation and investigation of how the thermodynamic and dynamic properties of glasses are related to the underlying PES.

Two recent advances are now providing new insight into larger systems. Discrete path sampling enables dynamical properties to be obtained efficiently, and is being used to calculate folding rates for proteins. Unexpected connections between dynamics and thermodynamics have also been revealed by the application of catastrophe theory to energy landscapes, and new results are now being obtained to characterize phase transitions.

Publications

Bond-selective energy redistribution in the chemisorption of CH3D and CD3H on Pt{110}-(1×2): A first-principles molecular dynamics study
M Sacchi, DJ Wales, SJ Jenkins
Computational and Theoretical Chemistry
(2012)
990
Chemistry. Pinning down the water hexamer.
RJ Saykally, DJ Wales
Science (New York, N.Y.)
(2012)
336
Evolution of the potential energy landscape with static pulling force for two model proteins.
DJ Wales, T Head-Gordon
The Journal of Physical Chemistry B
(2012)
116
The Effect of Nonnative Interactions on the Energy Landscapes of Frustrated Model Proteins
MT Oakley, DJ Wales, RL Johnston
Journal of Atomic, Molecular, and Optical Physics
(2012)
2012
Conformational dynamics of capping protein and interaction partners: Simulation studies (vol 80, pg 1066, 2012)
S Lukman, RC Robinson, D Wales, CS Verma
Proteins Structure Function and Bioinformatics
(2012)
80
The energy landscape as a computational tool
JM CARR, DJ WALES
Latest Advances in Atomic Cluster Collisions: Structure and Dynamics from the Nuclear to the Biological Scale
(2012)
Exploring the energy landscape
DJ WALES
International Journal of Modern Physics B
(2012)
19
Conformational dynamics of capping protein and interaction partners: Simulation studies
S Lukman, RC Robinson, D Wales, CS Verma
Proteins: Structure, Function, and Bioinformatics
(2012)
80
Energy landscapes of ion clusters in isotropic quadrupolar and octupolar traps
F Calvo, E Yurtsever, DJ Wales
J Chem Phys
(2012)
136
Enzyme catalysis from linear-scaling DFT: Application to chorismate mutase
G Lever, DJ Cole, C-K Skylaris, DJ Wales, KE Ranaghan, AJ Mulholland, MC Payne
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY
(2012)
243

Head of group

Research Interest Groups

Telephone number

01223 336354

Email address

Upcoming Events

Energy Landscapes 2026 Telluride

Click on an image to view animations from Energy Landscapes of Model Knotted Polymers, Journal of Chemical Theory and Computation, Tongfan Hao, Yinghao Ge, Mark A. Miller, Agustin L. N. Francesco, David J. Wales, DOI 10.1021/acs.jctc.5c01005

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