Professor of Chemical Physics

The self-assembly of complex mesoscopic structures, the folding of proteins, and the complicated phenomenology of glasses are all manifestations of the underlying potential energy surface (PES). In each of these fields related ideas have emerged to explain and predict chemical and physical properties in terms of the PES. In studies of clusters and glasses the PES itself is often investigated directly, whereas for proteins and other biomolecules it is also common to define free energy surfaces, as the figure below illustrates for lysozyme.

Applications of energy landscape theory in my group range from studies of tunnelling splitting patterns in small molecules to computer simulation of protein folding and misfolding, including aggregation of misfolded proteins. Other active research topics include global optimisation and investigation of how the thermodynamic and dynamic properties of glasses are related to the underlying PES.

Two recent advances are now providing new insight into larger systems. Discrete path sampling enables dynamical properties to be obtained efficiently, and is being used to calculate folding rates for proteins. Unexpected connections between dynamics and thermodynamics have also been revealed by the application of catastrophe theory to energy landscapes, and new results are now being obtained to characterize phase transitions.

Publications

Evolution of the potential energy landscape with static pulling force for two model proteins
DJ Wales, T Head-Gordon
J Phys Chem B
(2012)
116
The Effect of Nonnative Interactions on the Energy Landscapes of Frustrated Model Proteins
MT Oakley, DJ Wales, RL Johnston
Journal of Atomic and Molecular Physics
(2012)
2012
The energy landscape as a computational tool
JM Carr, DJ Wales
Latest Advances in Atomic Cluster Collisions: Structure and Dynamics from the Nuclear to the Biological Scale
(2012)
Exploring the energy landscape
DJ Wales
International Journal of Modern Physics B
(2012)
19
Conformational dynamics of capping protein and interaction partners: simulation studies.
S Lukman, RC Robinson, D Wales, CS Verma
Proteins Structure Function and Bioinformatics
(2012)
80
Energy landscapes of ion clusters in isotropic quadrupolar and octupolar traps
F Calvo, E Yurtsever, DJ Wales
Journal of Chemical Physics
(2012)
136
Enzyme catalysis from linear-scaling DFT: Application to chorismate mutase
G Lever, DJ Cole, C-K Skylaris, DJ Wales, KE Ranaghan, AJ Mulholland, MC Payne
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY
(2012)
243
Characterizing molecular motion in H2O and H3O+ with dynamical instability statistics.
JR Green, TS Hofer, RS Berry, DJ Wales
The Journal of Chemical Physics
(2011)
135
A survey of the potential energy surface for the (benzene)13 cluster.
D Chakrabarti, TS Totton, M Kraft, DJ Wales
Phys Chem Chem Phys
(2011)
13
H2 Molecules Encapsulated in Extended Ben Cluster Cages: Toward Light-Metal Nanofoams for Hydrogen Storage
FY Naumkin, DJ Wales
J Phys Chem A
(2011)
115

Head of group

Research Interest Groups

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01223 336354

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