Professor of Chemical Physics

The self-assembly of complex mesoscopic structures, the folding of proteins, and the complicated phenomenology of glasses are all manifestations of the underlying potential energy surface (PES). In each of these fields related ideas have emerged to explain and predict chemical and physical properties in terms of the PES. In studies of clusters and glasses the PES itself is often investigated directly, whereas for proteins and other biomolecules it is also common to define free energy surfaces, as the figure below illustrates for lysozyme.

Applications of energy landscape theory in my group range from studies of tunnelling splitting patterns in small molecules to computer simulation of protein folding and misfolding, including aggregation of misfolded proteins. Other active research topics include global optimisation and investigation of how the thermodynamic and dynamic properties of glasses are related to the underlying PES.

Two recent advances are now providing new insight into larger systems. Discrete path sampling enables dynamical properties to be obtained efficiently, and is being used to calculate folding rates for proteins. Unexpected connections between dynamics and thermodynamics have also been revealed by the application of catastrophe theory to energy landscapes, and new results are now being obtained to characterize phase transitions.

Publications

The energy landscape, folding pathways and the kinetics of a knotted protein
MC Prentiss, DJ Wales, PG Wolynes
PLoS computational biology
(2010)
6
Modelling the internal structure of nascent soot particles
TS Totton, D Chakrabarti, AJ Misquitta, M Sander, DJ Wales, M Kraft
Combustion and Flame
(2010)
157
Hydrogen on graphene under stress: Molecular dissociation and gap opening
H McKay, DJ Wales, SJ Jenkins, JA Verges, PL de Andres
Physical Review B
(2010)
81
Interpolation schemes for peptide rearrangements
MS Bauer, B Strodel, SN Fejer, EF Koslover, DJ Wales
Journal of Chemical Physics
(2010)
132
Energy landscapes: some new horizons.
DJ Wales
Current opinion in structural biology
(2010)
20
Symmetrization of the AMBER and CHARMM Force Fields
E Małolepsza, B Strodel, M Khalili, S Trygubenko, SN Fejer, DJ Wales
Journal of computational chemistry
(2010)
31
Emergent complexity from simple anisotropic building blocks: Shells, tubes, and spirals
SN Fejer, D Chakrabarti, DJ Wales
ACS nano
(2010)
4
Energy Landscapes: Some New Horizons
DJ Wales
Curr. Op. Struct. Biol.
(2010)
20
Interpolation schemes for peptide rearrangements (9 pages).
MS Bauer, B Strodel, SN Fejer, EF Koslover, DJ Wales
J. Chem. Phys.
(2010)
132
Rational design of helical architectures
D Chakrabarti, SN Fejer, DJ Wales
Proceedings of the National Academy of Sciences
(2009)
106

Head of group

Research Interest Groups

Telephone number

01223 336354

Email address