Professor of Chemical Physics

The self-assembly of complex mesoscopic structures, the folding of proteins, and the complicated phenomenology of glasses are all manifestations of the underlying potential energy surface (PES). In each of these fields related ideas have emerged to explain and predict chemical and physical properties in terms of the PES. In studies of clusters and glasses the PES itself is often investigated directly, whereas for proteins and other biomolecules it is also common to define free energy surfaces, as the figure below illustrates for lysozyme.

Applications of energy landscape theory in my group range from studies of tunnelling splitting patterns in small molecules to computer simulation of protein folding and misfolding, including aggregation of misfolded proteins. Other active research topics include global optimisation and investigation of how the thermodynamic and dynamic properties of glasses are related to the underlying PES.

Two recent advances are now providing new insight into larger systems. Discrete path sampling enables dynamical properties to be obtained efficiently, and is being used to calculate folding rates for proteins. Unexpected connections between dynamics and thermodynamics have also been revealed by the application of catastrophe theory to energy landscapes, and new results are now being obtained to characterize phase transitions.

Publications

Analysis of cooperativity and localization for atomic rearrangements
SA Trygubenko, DJ Wales
The Journal of Chemical Physics
(2004)
121
Folding of the GB1 hairpin peptide from discrete path sampling
DA Evans, DJ Wales
J. Chem. Phys.
(2004)
121
New results for phase transitions from catastrophe theory.
TV Bogdan, DJ Wales
The Journal of Chemical Physics
(2004)
120
Supercooled Lennard-Jones liquids and glasses: a kinetic Monte Carlo approach
J Hernandez-Rojas, DJ Wales
Journal of Non Crystalline Solids
(2004)
336
Some further applications of discrete path sampling to cluster isomerization
DJ Wales
Molecular Physics
(2004)
102
Comparison of kinetic Monte Carlo and molecular dynamics simulations of diffusion in a model glass former.
TF Middleton, DJ Wales
J Chem Phys
(2004)
120
A coarse-graining of energy landscape of proteins - Structural stability of the most stable states
K Hoshino, Y Matsunaga, M Miller, DJ Wales, T Komatsuzaki
AIP Conference Proceedings
(2004)
708
An ab initio study of tunneling splittings in the water dimer
Y Watanabe, T Taketsugu, DJ Wales
The Journal of Chemical Physics
(2004)
120
A Doubly Nudged Elastic Band Method for Finding Transition States
SA Trygubenko, DJ Wales
The Journal of Chemical Physics
(2004)
120
New results for phase transitions from catastrophe theory
TV Bogdan, DJ Wales
J. Chem. Phys.
(2004)
120

Head of group

Research Interest Groups

Telephone number

01223 336354

Email address