Professor of Chemical Physics

The self-assembly of complex mesoscopic structures, the folding of proteins, and the complicated phenomenology of glasses are all manifestations of the underlying potential energy surface (PES). In each of these fields related ideas have emerged to explain and predict chemical and physical properties in terms of the PES. In studies of clusters and glasses the PES itself is often investigated directly, whereas for proteins and other biomolecules it is also common to define free energy surfaces, as the figure below illustrates for lysozyme.

Applications of energy landscape theory in my group range from studies of tunnelling splitting patterns in small molecules to computer simulation of protein folding and misfolding, including aggregation of misfolded proteins. Other active research topics include global optimisation and investigation of how the thermodynamic and dynamic properties of glasses are related to the underlying PES.

Two recent advances are now providing new insight into larger systems. Discrete path sampling enables dynamical properties to be obtained efficiently, and is being used to calculate folding rates for proteins. Unexpected connections between dynamics and thermodynamics have also been revealed by the application of catastrophe theory to energy landscapes, and new results are now being obtained to characterize phase transitions.

Publications

Global minima of (C60) Ca2+, (C60) F− and (C60) I− clusters
J Hernández-Rojas, J Bretón, JMG Llorente, DJ Wales
Chem. Phys. Lett.
(2005)
410
Finding pathways between distant local minima (7 pages)
JM Carr, SA Trygubenko, DJ Wales
The Journal of chemical physics
(2005)
122
Protonated water clusters described by an empirical valence bond potential
T James, DJ Wales
The Journal of Chemical Physics
(2005)
122
Pathways for dissociative methane chemisorption on Pt{110}-(1x2)
AT Anghel, DJ Wales, SJ Jenkins, DA King
Physical Review B
(2005)
71
Stacked clusters of polycyclic aromatic hydrocarbon molecules
M Rapacioli, F Calvo, F Spiegelman, C Joblin, DJ Wales
Journal of Physical Chemistry A
(2005)
109
How many dimensions are required to approximate the potential energy landscape of a model protein? - art. no. 084714
T Komatsuzaki, K Hoshino, Y Matsunaga, GJ Rylance, RL Johnston, DJ Wales
Journal of Chemical Physics
(2005)
122
Discussion
DC Clary, DJ Wales, JC Schon, PG Wolynes
PHILOS T ROY SOC A
(2005)
363
Discussion
DC Clary, DJ Wales, JC Schön, PG Wolynes
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES
(2005)
363
Symmetry and density functionals
DJW *
Molecular Physics
(2005)
103
Novel Structural Motifs in Clusters of Dipolar Spheres: Knots, Links, and Coils
MA Miller, DJ Wales
J. Phys. Chem. B
(2005)
109

Head of group

Research Interest Groups

Telephone number

01223 336354

Email address

Click on an image to view animations from Energy Landscapes of Model Knotted Polymers, Journal of Chemical Theory and Computation, Tongfan Hao, Yinghao Ge, Mark A. Miller, Agustin L. N. Francesco, David J. Wales, DOI 10.1021/acs.jctc.5c01005

composite knot

link knot