Professor of Chemical Physics

The self-assembly of complex mesoscopic structures, the folding of proteins, and the complicated phenomenology of glasses are all manifestations of the underlying potential energy surface (PES). In each of these fields related ideas have emerged to explain and predict chemical and physical properties in terms of the PES. In studies of clusters and glasses the PES itself is often investigated directly, whereas for proteins and other biomolecules it is also common to define free energy surfaces, as the figure below illustrates for lysozyme.

Applications of energy landscape theory in my group range from studies of tunnelling splitting patterns in small molecules to computer simulation of protein folding and misfolding, including aggregation of misfolded proteins. Other active research topics include global optimisation and investigation of how the thermodynamic and dynamic properties of glasses are related to the underlying PES.

Two recent advances are now providing new insight into larger systems. Discrete path sampling enables dynamical properties to be obtained efficiently, and is being used to calculate folding rates for proteins. Unexpected connections between dynamics and thermodynamics have also been revealed by the application of catastrophe theory to energy landscapes, and new results are now being obtained to characterize phase transitions.

Publications

Evolution of the potential energy surface with size for Lennard-Jones clusters
JPK Doye, MA Miller, DJ Wales
J. Chem. Phys.
(1999)
111
Energy landscape of a model protein
MA Miller, DJ Wales
Journal of Chemical Physics
(1999)
111
Structural relaxation in atomic clusters: master equation dynamics.
MA Miller, JP Doye, DJ Wales
\pre
(1999)
60
Review: Chemistry - Global optimization of clusters, crystals, and biomolecules
DJ Wales, HA Scheraga
Science (New York, N.Y.)
(1999)
285
Rearrangements and tunneling splittings of protonated water dimer
DJ Wales
The Journal of Chemical Physics
(1999)
110
Rydberg excitations in rare gas clusters:: structure and electronic spectra of Arn* (3 ≤ n ≤ 25)
FY NAUMKIN, DJ WALES
Molecular Physics
(1999)
96
The double-funnel energy landscape of the 38-atom Lennard-Jones cluster
JPK Doye, MA Miller, DJ Wales
The Journal of Chemical Physics
(1999)
110
Defect migration in crystalline silicon
LJ Munro, DJ Wales
Physical Review B
(1999)
59
Structural transitions and global minima of sodium chloride clusters
JPK Doye, DJ Wales
Physical Review B Condensed Matter and Materials Physics
(1999)
59
Global optimization of clusters, crystals and biomolecules
DJ Wales, HA Scheraga
Science
(1999)
285

Head of group

Research Interest Groups

Telephone number

01223 336354

Email address

Upcoming Events

Energy Landscapes 2026 Telluride

Click on an image to view animations from Energy Landscapes of Model Knotted Polymers, Journal of Chemical Theory and Computation, Tongfan Hao, Yinghao Ge, Mark A. Miller, Agustin L. N. Francesco, David J. Wales, DOI 10.1021/acs.jctc.5c01005

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