Professor of Chemical Physics

The self-assembly of complex mesoscopic structures, the folding of proteins, and the complicated phenomenology of glasses are all manifestations of the underlying potential energy surface (PES). In each of these fields related ideas have emerged to explain and predict chemical and physical properties in terms of the PES. In studies of clusters and glasses the PES itself is often investigated directly, whereas for proteins and other biomolecules it is also common to define free energy surfaces, as the figure below illustrates for lysozyme.

Applications of energy landscape theory in my group range from studies of tunnelling splitting patterns in small molecules to computer simulation of protein folding and misfolding, including aggregation of misfolded proteins. Other active research topics include global optimisation and investigation of how the thermodynamic and dynamic properties of glasses are related to the underlying PES.

Two recent advances are now providing new insight into larger systems. Discrete path sampling enables dynamical properties to be obtained efficiently, and is being used to calculate folding rates for proteins. Unexpected connections between dynamics and thermodynamics have also been revealed by the application of catastrophe theory to energy landscapes, and new results are now being obtained to characterize phase transitions.

Publications

Energy Landscapes for Base-Flipping in a Model DNA Duplex.
Nicy, D Chakraborty, DJ Wales
Journal of Physical Chemistry B
(2022)
126
Energy Landscapes of Carbon Clusters from Tight-Binding Quantum Potentials.
D Furman, F Naumkin, DJ Wales
The journal of physical chemistry. A
(2022)
126
The Energy Landscape Perspective: Encoding Structure and Function for Biomolecules
K Röder, DJ Wales
Frontiers in Molecular Biosciences
(2022)
9
The Energy Landscape Perspective: Encoding Structure and Function for Biomolecules.
K Röder, DJ Wales
Front Mol Biosci
(2022)
9
Characterising the Area Under the Curve Loss Function Landscape
MP Niroomand, CT Cafolla, JWR Morgan, DJ Wales
Machine Learning: Science and Technology
(2022)
3
Elucidating the solution structure of the K-means cost function using energy landscape theory
L Dicks, DJ Wales
The Journal of chemical physics
(2022)
156
The energy landscape perspective: cutting a Gordian knot
S Neelamraju, S Gosavi, DJ Wales
(2022)
21
Preface
DJ Wales
Frontiers of Nanoscience
(2022)
21
Rotational Dynamics of Desorption: Methane and Ethane at Stepped and Kinked Platinum Surfaces
SC Matysik, DJ Wales, SJ Jenkins
The Journal of Physical Chemistry C: Energy Conversion and Storage, Optical and Electronic Devices, Interfaces, Nanomaterials, and Hard Matter
(2021)
125
Energy landscapes for a modified repulsive Weeks-Chandler-Andersen potential
A Banerjee, DJ Wales
Journal of physics. Condensed matter : an Institute of Physics journal
(2021)
34

Head of group

Research Interest Groups

Telephone number

01223 336354

Email address