Professor of Chemical Physics

The self-assembly of complex mesoscopic structures, the folding of proteins, and the complicated phenomenology of glasses are all manifestations of the underlying potential energy surface (PES). In each of these fields related ideas have emerged to explain and predict chemical and physical properties in terms of the PES. In studies of clusters and glasses the PES itself is often investigated directly, whereas for proteins and other biomolecules it is also common to define free energy surfaces, as the figure below illustrates for lysozyme.

Applications of energy landscape theory in my group range from studies of tunnelling splitting patterns in small molecules to computer simulation of protein folding and misfolding, including aggregation of misfolded proteins. Other active research topics include global optimisation and investigation of how the thermodynamic and dynamic properties of glasses are related to the underlying PES.

Two recent advances are now providing new insight into larger systems. Discrete path sampling enables dynamical properties to be obtained efficiently, and is being used to calculate folding rates for proteins. Unexpected connections between dynamics and thermodynamics have also been revealed by the application of catastrophe theory to energy landscapes, and new results are now being obtained to characterize phase transitions.

Publications

A well-behaved theoretical framework for ReaxFF reactive force fields
D Furman, DJ Wales
The Journal of chemical physics
(2020)
153
Energy Landscapes of Deoxyxylo- A nd Xylo-Nucleic Acid Octamers
DJ Sharpe, K Röder, DJ Wales
The journal of physical chemistry. B
(2020)
124
From sticky-hard-sphere to Lennard-Jones-type clusters.
L Trombach, RS Hoy, DJ Wales, P Schwerdtfeger
Physical Review E
(2020)
97
Affinity-Selected Bicyclic Peptide G‑Quadruplex Ligands Mimic a Protein-like Binding Mechanism
KC Liu, K Röder, C Mayer, S Adhikari, DJ Wales, S Balasubramanian
Journal of the American Chemical Society
(2020)
142
Defining, Calculating, and Converging Observables of a Kinetic Transition Network.
TD Swinburne, DJ Wales
Journal of Chemical Theory and Computation
(2020)
16
Perspective: new insights from loss function landscapes of neural networks
SR Chitturi, PC Verpoort, AA Lee, DJ Wales
Machine Learning Science and Technology
(2020)
1
Counterion-Trapped-Molecules: From High Polarity and Enriched IR Spectra to Induced Isomerization
FY Naumkin, DJ Wales
ChemPhysChem: a European journal of chemical physics and physical chemistry
(2020)
21
Multifunnel Energy Landscapes for Phosphorylated Translation Repressor 4E-BP2 and Its Mutants.
W Kang, F Jiang, Y-D Wu, DJ Wales
Journal of Chemical Theory and Computation
(2020)
16
A multifunnel energy landscape encodes the competing $\alpha$-helix and $\beta$-hairpin conformations for a designed peptide
D Chakraborty, Y Chebaro, DJ Wales
Phys Chem Chem Phys
(2020)
22
Flip rearrangement in the water pentamer: Analysis of electronic structure
T Xu, X Bin, SR Kirk, DJ Wales, S Jenkins
International Journal of Quantum Chemistry
(2019)
120

Head of group

Research Interest Groups

Telephone number

01223 336354

Email address