Professor of Chemical Physics

The self-assembly of complex mesoscopic structures, the folding of proteins, and the complicated phenomenology of glasses are all manifestations of the underlying potential energy surface (PES). In each of these fields related ideas have emerged to explain and predict chemical and physical properties in terms of the PES. In studies of clusters and glasses the PES itself is often investigated directly, whereas for proteins and other biomolecules it is also common to define free energy surfaces, as the figure below illustrates for lysozyme.

Applications of energy landscape theory in my group range from studies of tunnelling splitting patterns in small molecules to computer simulation of protein folding and misfolding, including aggregation of misfolded proteins. Other active research topics include global optimisation and investigation of how the thermodynamic and dynamic properties of glasses are related to the underlying PES.

Two recent advances are now providing new insight into larger systems. Discrete path sampling enables dynamical properties to be obtained efficiently, and is being used to calculate folding rates for proteins. Unexpected connections between dynamics and thermodynamics have also been revealed by the application of catastrophe theory to energy landscapes, and new results are now being obtained to characterize phase transitions.

Publications

Structures and Energy Landscapes of Hydrated Sulfate Clusters.
LC Smeeton, JD Farrell, MT Oakley, DJ Wales, RL Johnston
Journal of Chemical Theory and Computation
(2015)
11
Analysis of the Contrasting Pathogenicities Induced by the D222G Mutation in 1918 and 2009 Pandemic Influenza A Viruses.
C Shang, CS Whittleston, KH Sutherland-Cash, DJ Wales
J Chem Theory Comput
(2015)
11
Exploiting the potential energy landscape to sample free energy
AJ Ballard, S Martiniani, JD Stevenson, S Somani, DJ Wales
WIREs Computational Molecular Science
(2015)
5
Harmonic superposition method for grand-canonical ensembles
F Calvo, DJ Wales
Chemical Physics Letters
(2015)
623
Design of a Kagome lattice from soft anisotropic particles
SN Fejer, DJ Wales
Soft Matter
(2015)
11
Energy landscapes, folding mechanisms, and kinetics of RNA tetraloop hairpins
D Chakraborty, R Collepardo-Guevara, DJ Wales
J Am Chem Soc
(2014)
136
The effect of dispersion damping functions on the structure of water clusters
J Hernández-Rojas, DJ Wales
Chemical Physics
(2014)
444
Benchmarks for Characterization of Minima, Transition States, and Pathways in Atomic, Molecular, and Condensed Matter Systems.
ST Chill, J Stevenson, V Ruehle, C Shang, P Xiao, JD Farrell, DJ Wales, G Henkelman
Journal of Chemical Theory and Computation
(2014)
10
Direct observation of intermediates in a thermodynamically controlled solid-state dynamic covalent reaction.
AM Belenguer, GI Lampronti, DJ Wales, JKM Sanders
Journal of the American Chemical Society
(2014)
136
Superposition-enhanced estimation of optimal temperature spacings for parallel tempering simulations
AJ Ballard, DJ Wales
Journal of chemical theory and computation
(2014)
10

Head of group

Research Interest Groups

Telephone number

01223 336354

Email address

Click on an image to view animations from Energy Landscapes of Model Knotted Polymers, Journal of Chemical Theory and Computation, Tongfan Hao, Yinghao Ge, Mark A. Miller, Agustin L. N. Francesco, David J. Wales, DOI 10.1021/acs.jctc.5c01005

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