Professor of Chemical Physics

The self-assembly of complex mesoscopic structures, the folding of proteins, and the complicated phenomenology of glasses are all manifestations of the underlying potential energy surface (PES). In each of these fields related ideas have emerged to explain and predict chemical and physical properties in terms of the PES. In studies of clusters and glasses the PES itself is often investigated directly, whereas for proteins and other biomolecules it is also common to define free energy surfaces, as the figure below illustrates for lysozyme.

Applications of energy landscape theory in my group range from studies of tunnelling splitting patterns in small molecules to computer simulation of protein folding and misfolding, including aggregation of misfolded proteins. Other active research topics include global optimisation and investigation of how the thermodynamic and dynamic properties of glasses are related to the underlying PES.

Two recent advances are now providing new insight into larger systems. Discrete path sampling enables dynamical properties to be obtained efficiently, and is being used to calculate folding rates for proteins. Unexpected connections between dynamics and thermodynamics have also been revealed by the application of catastrophe theory to energy landscapes, and new results are now being obtained to characterize phase transitions.

Publications

Design principles for Bernal spirals and helices with tunable pitch.
SN Fejer, D Chakrabarti, H Kusumaatmaja, DJ Wales
Nanoscale
(2014)
6
A conformational factorisation approach for estimating the binding free energies of macromolecules
K Mochizuki, CS Whittleston, S Somani, H Kusumaatmaja, DJ Wales
Phys Chem Chem Phys
(2014)
16
Exploring energy landscapes: from molecular to mesoscopic systems.
D Chakrabarti, H Kusumaatmaja, V Rühle, DJ Wales
Phys. Chem. Chem. Phys.
(2014)
16
Wide Exploration of OPEP Protein Energy Landscapes using Advanced Monte Carlo Methods
T Cragnolini, KH Sutherland-Cash, D Wales, S Pasquali, P Derreumaux
Biophysical Journal
(2014)
106
Observation time scale, free-energy landscapes, and molecular symmetry
DJ Wales, P Salamon
Proceedings of the National Academy of Sciences of the United States of America
(2013)
111
Communication: a new paradigm for structure prediction in multicomponent systems.
D Schebarchov, DJ Wales
The Journal of Chemical Physics
(2013)
139
Potential energy landscapes for the 2D XY model: Minima, transition states, and pathways
D Mehta, C Hughes, M Schröck, DJ Wales
Journal of Chemical Physics
(2013)
139
Communication: Kinetics of chemical ordering in Ag-Au and Ag-Ni nanoalloys.
F Calvo, A Fortunelli, F Negreiros, DJ Wales
Journal of Chemical Physics
(2013)
139
Surveying a complex potential energy landscape: Overcoming broken ergodicity using basin-sampling
DJ Wales
Chemical Physics Letters
(2013)
584
Exploring energy landscapes: Metrics, pathways, and normal-mode analysis for rigid-body molecules
V Rühle, H Kusumaatmaja, D Chakrabarti, DJ Wales
J Chem Theory Comput
(2013)
9

Head of group

Research Interest Groups

Telephone number

01223 336354

Email address

Upcoming Events

Energy Landscapes 2026 Telluride

Click on an image to view animations from Energy Landscapes of Model Knotted Polymers, Journal of Chemical Theory and Computation, Tongfan Hao, Yinghao Ge, Mark A. Miller, Agustin L. N. Francesco, David J. Wales, DOI 10.1021/acs.jctc.5c01005

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