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- Currently displaying 101 - 120 of 692 publications
Energy Landscape for the Membrane Fusion Pathway in Influenza A Hemagglutinin From Discrete Path Sampling
Front Chem
(2020)
8
575195
(doi: 10.3389/fchem.2020.575195)
Fragility and correlated dynamics in supercooled liquids.
The Journal of chemical physics
(2020)
153
124501
(doi: 10.1063/5.0015091)
Archetypal landscapes for deep neural networks.
Proceedings of the National Academy of Sciences
(2020)
117
21857
(doi: 10.1073/pnas.1919995117)
Protein energy landscape exploration with structure-based models
Current opinion in structural biology
(2020)
64
145
(doi: 10.1016/j.sbi.2020.07.003)
Improving double-ended transition state searches for soft-matter systems.
The Journal of Chemical Physics
(2020)
153
034104
(doi: 10.1063/5.0011829)
A well-behaved theoretical framework for ReaxFF reactive force fields
J Chem Phys
(2020)
153
021102
(doi: 10.1063/5.0013906)
Efficient and exact sampling of transition path ensembles on Markovian networks.
The Journal of chemical physics
(2020)
153
024121
(doi: 10.1063/5.0012128)
Energy Landscapes of Deoxyxylo- and Xylo-Nucleic Acid Octamers
J Phys Chem B
(2020)
124
4062
(doi: 10.1021/acs.jpcb.0c01420)
From sticky-hard-sphere to Lennard-Jones-type clusters
Phys Rev E
(2020)
97
043309
(doi: 10.1103/physreve.97.043309)
Defining, Calculating, and Converging Observables of a Kinetic Transition Network.
Journal of chemical theory and computation
(2020)
16
2661
(doi: 10.1021/acs.jctc.9b01211)
Perspective: New insights from loss function landscapes of neural networks
Machine Learning: Science and Technology
(2020)
1
023002
(doi: 10.1088/2632-2153/ab7aef)
Affinity-Selected Bicyclic Peptide G-Quadruplex Ligands Mimic a Protein-like Binding Mechanism
J Am Chem Soc
(2020)
142
8367
(doi: 10.1021/jacs.0c01879)
Counterion-Trapped-Molecules: From High Polarity and Enriched IR Spectra to Induced Isomerization.
ChemPhysChem: a European journal of chemical physics and physical chemistry
(2020)
21
348
(doi: 10.1002/cphc.201901112)
Multifunnel Energy Landscapes for Phosphorylated Translation Repressor 4E-BP2 and Its Mutants
Journal of Chemical Theory and Computation
(2020)
16
800
(doi: 10.1021/acs.jctc.9b01042)
A multifunnel energy landscape encodes the competing $\alpha$-helix and $\beta$-hairpin conformations for a designed peptide
Physical chemistry chemical physics : PCCP
(2020)
22
1359
(doi: 10.1039/c9cp04778f)
Flip rearrangement in the water pentamer: Analysis of electronic structure
International Journal of Quantum Chemistry
(2019)
120
ARTN e26124
(doi: 10.1002/qua.26124)
Nested basin-sampling
Journal of chemical theory and computation
(2019)
15
6865
(doi: 10.1021/acs.jctc.9b00567)
Transforming the Accuracy and Numerical Stability of ReaxFF Reactive Force Fields.
The Journal of Physical Chemistry Letters
(2019)
10
7215
(doi: 10.1021/acs.jpclett.9b02810)
Structural transitions in the RNA 7SK 5' hairpin and their effect on HEXIM binding.
Nucleic acids research
(2019)
48
373
(doi: 10.1093/nar/gkz1071)
Energy Landscapes and Hybridization Pathways for DNA Hexamer Duplexes
J Phys Chem Lett
(2019)
10
6771
(doi: 10.1021/acs.jpclett.9b02356)
